COMBINE specifications
| Name of the specification | Identifier (in the combine.specifications collection) | Location | node |
|---|---|---|---|
| Biological Pathway Exchange format | biopax | standards/biopax | 86 |
| BioPAX Level 1 | biopax.level-1 | standards/biopax/level-1 | 89 |
| BioPAX Level 2 | biopax.level-2 | standards/biopax/level-2 | 88 |
| BioPAX Level 3 | biopax.level-3 | standards/biopax/level-3 | 87 |
| CellML | cellml | standards/cellml | 93 |
| CellML 1.0 | cellml.1.0 | standards/cellml/1/0 | 93 |
| CellML 1.1 | cellml.1.1 | standards/cellml/1/1 | 94 |
| COMBINE archive | omex | standards/omex | 161 |
| COMBINE archive RC1 | omex.RC-1 | standards/omex/RC-1 | 174 |
| COMBINE archive RC2 | omex.RC-2 | standards/omex/RC-2 | 176 |
| COMBINE archive Version 1 | omex.version-1 | standards/omex/version-1 | 180 |
| COMBINE archive manifest | omex-manifest | standards/omex-manifest | 156 |
| COMBINE archive metadata | omex-metadata | standards/omex-metadata | 157 |
| COMBINE archive metadata 1.0 | omex-metadata.1.0 | standards/omex-metadata/1/0 | 280 |
| GenMAPP Pathway Markup Language | gpml | standards/gpml | 102 |
| Systems Biology Graphical Notation | sbgn | standards/sbgn | 52 |
| SBGN Activity Flow language | sbgn.af | standards/sbgn/af | 66 |
| SBGN AF Level 1 | sbgn.af.level-1 | standards/sbgn/af/level-1/version-1/2 | 208 |
| SBGN AF Level 1 Version 1 | sbgn.af.level-1.version-1 | standards/sbgn/af/level-1/version-1/2 | 208 |
| SBGN AF Level 1 Version 1.0 | sbgn.af.level-1.version-1.0 | standards/sbgn/af/level-1/version-1/0 | 67 |
| SBGN AF Level 1 Version 1.2 | sbgn.af.level-1.version-1.2 | standards/sbgn/af/level-1/version-1/2 | 208 |
| SBGN ER | sbgn.er | standards/sbgn/er | 57 |
| SBGN ER Level 1 | sbgn.er.level-1 | standards/sbgn/er/level-1/version-2 | 201 |
| SBGN ER Level 1 Version 1 | sbgn.er.level-1.version-1 | standards/sbgn/er/level-1/version-1/2 | 56 |
| SBGN ER Level 1 Version 1.0 | sbgn.er.level-1.version-1.0 | standards/sbgn/er/level-1/version-1/0 | 60 |
| SBGN ER Level 1 Version 1.1 | sbgn.er.level-1.version-1.1 | standards/sbgn/er/level-1/version-1/1 | 59 |
| SBGN ER Level 1 Version 1.2 | sbgn.er.level-1.version-1.2 | standards/sbgn/er/level-1/version-1/2 | 56 |
| SBGN ER Level 1 Version 2 | sbgn.er.level-1.version-2 | standards/sbgn/er/level-1/version-2 | 201 |
| SBGN PD | sbgn.pd | standards/sbgn/pd | 61 |
| SBGN PD Level 1 | sbgn.pd.level-1 | standards/sbgn/pd/level-1/version-1/3 | 62 |
| SBGN PD Level 1 Version 1 | sbgn.pd.level-1.version-1 | standards/sbgn/pd/level-1/version-1/3 | 62 |
| SBGN PD Level 1 Version 1.0 | sbgn.pd.level-1.version-1.0 | standards/sbgn/pd/level-1/version-1/0 | 65 |
| SBGN PD Level 1 Version 1.1 | sbgn.pd.level-1.version-1.1 | standards/sbgn/pd/level-1/version-1/1 | 64 |
| SBGN PD Level 1 Version 1.2 | sbgn.pd.level-1.version-1.2 | standards/sbgn/pd/level-1/version-1/2 | 63 |
| SBGN PD Level 1 Version 1.3 | sbgn.pd.level-1.version-1.3 | standards/sbgn/pd/level-1/version-1/3 | 62 |
| Systems Biology Markup Language | sbml | standards/sbml | 55 |
| SBML Level 1 | sbml.level-1 | standards/sbml/level-1/version-2 | 78 |
| SBML Level 1 Version 1 | sbml.level-1.version-1 | standards/sbml/level-1/version-1 | 79 |
| SBML Level 1 Version 2 | sbml.level-1.version-2 | standards/sbml/level-1/version-2 | 78 |
| SBML Level 2 | sbml.level-2 | standards/sbml/level-2/version-5/release-1 | 192 |
| SBML Level 2 Version 1 | sbml.level-2.version-1 | standards/sbml/level-2/version-1 | 84 |
| SBML Level 2 Version 2 | sbml.level-2.version-2 | standards/sbml/level-2/version-2 | 83 |
| SBML Level 2 Version 3 | sbml.level-2.version-3 | standards/sbml/level-2/version-3/release-2 | 81 |
| SBML Level 2 Version 3 Release 1 | sbml.level-2.version-3.release-1 | standards/sbml/level-2/version-3/release-1 | 82 |
| SBML Level 2 Version 3 Release 2 | sbml.level-2.version-3.release-2 | standards/sbml/level-2/version-3/release-2 | 81 |
| SBML Level 2 Version 4 | sbml.level-2.version-4 | standards/sbml/level-2/version-4/release-1 | 80 |
| SBML Level 2 Version 4 Release 1 | sbml.level-2.version-4.release-1 | standards/sbml/level-2/version-4/release-1 | 80 |
| SBML Level 2 Version 5 | sbml.level-2.version-5 | standards/sbml/level-2/version-5/release-1 | 192 |
| SBML Level 2 Version 5 Release Candidate 1 | sbml.level-2.version-5.RC-1 | standards/sbml/level-2/version-5/RC-1 | 185 |
| SBML Level 2 Version 5 Release 1 | sbml.level-2.version-5.release-1 | standards/sbml/level-2/version-5/release-1 | 192 |
| SBML Level 3 | sbml.level-3 | standards/sbml/level-3/version-2/core/release-2 | 216 |
| SBML Level 3 Version 1 | sbml.level-3.version-1 | standards/sbml/level-3/version-1/core/release-3 | 216 |
| SBML Level 3 Version 1 Core | sbml.level-3.version-1.core | standards/sbml/level-3/version-1/core/release-3 | 216 |
| SBML Level 3 Version 1 Core Release 1 | sbml.level-3.version-1.core.release-1 | standards/sbml/level-3/version-1/core/release-1 | 85 |
| SBML Level 3 Version 1 Core Release 2 | sbml.level-3.version-1.core.release-2 | standards/sbml/level-3/version-1/core/release-2 | 216 |
| SBML Level 3 Version 1 Core Release 3 | sbml.level-3.version-1.core.release-3 | standards/sbml/level-3/version-1/core/release-3 | 281 |
| SBML Level 3 Version 2 Core | sbml.level-3.version-2.core | standards/sbml/level-3/version-2/ | 234 |
| SBML Level 3 Version 2 Core Release 1 | sbml.level-3.version-2.core.release-1 | standards/sbml/level-3/version-2/core/release-1 | 234 |
| SBML Level 3 Version 2 Core Release 2 | sbml.level-3.version-2.core.release-2 | standards/sbml/level-3/version-2/core/release-2 | 263 |
| SBML Level 3 Distributions Package | sbml.level-3.version-1.distrib | specifications/sbml.level-3.version-1.distrib | 279 |
| SBML Level 3 Distributions Package Version 1 | sbml.level-3.version-1.distrib.version-1 | specifications/sbml.level-3.version-1.distrib.version-1 | 279 |
| SBML Level 3 Distributions Package Version 1 Release 1 | sbml.level-3.version-1.distrib.version-1.release-1 | specifications/sbml.level-3.version-1.distrib.version-1.release-1 | 279 |
| SBML Level 3 Flux Balance Constraints Package | sbml.level-3.version-1.fbc | standards/sbml/level-3/version-1/fbc/version-1/release-1 | 128 |
| SBML Level 3 Flux Balance Constraints Package Version 1 | sbml.level-3.version-1.fbc.version-1 | standards/sbml/level-3/version-1/fbc/version-1/release-1 | 128 |
| SBML Level 3 Flux Balance Constraints Package Version 1 Release 1 | sbml.level-3.version-1.fbc.version-1.release-1 | standards/sbml/level-3/version-1/fbc/version-1/release-1 | 128 |
| SBML Level 3 Flux Balance Constraints Package Version 2 | sbml.level-3.version-1.fbc.version-2 | standards/sbml/level-3/version-1/fbc/version-2/release-1 | 198 |
| SBML Level 3 Flux Balance Constraints Package Version 2 Release 1 | sbml.level-3.version-1.fbc.version-2.release-1 | standards/sbml/level-3/version-1/fbc/version-2/release-1 | 198 |
| SBML Level 3 Groups Package | sbml.level-3.version-1.groups | standards/sbml/level-3/version-1/groups/version-1/release-1 | 205 |
| SBML Level 3 Groups Package Version 1 | sbml.level-3.version-1.groups.version-1 | standards/sbml/level-3/version-1/groups/version-1/release-1 | 205 |
| SBML Level 3 Groups Package Version 1 Release 1 | sbml.level-3.version-1.groups.version-1.release-1 | standards/sbml/level-3/version-1/groups/version-1/release-1 | 205 |
| SBML Level 3 Hierarchical Model Composition Package | sbml.level-3.version-1.comp | standards/sbml/level-3/version-1/comp/version-1/release-2 | 131 |
| SBML Level 3 Hierarchical Model Composition Package Version 1 | sbml.level-3.version-1.comp.version-1 | standards/sbml/level-3/version-1/comp/version-1/release-2 | 131 |
| SBML Level 3 Hierarchical Model Composition Package Version 1 Release 1 | sbml.level-3.version-1.comp.version-1.release-1 | standards/sbml/level-3/version-1/comp/version-1/release-1 | 120 |
| SBML Level 3 Hierarchical Model Composition Package Version 1 Release 2 | sbml.level-3.version-1.comp.version-1.release-2 | standards/sbml/level-3/version-1/comp/version-1/release-2 | 131 |
| SBML Level 3 Layout Package | sbml.level-3.version-1.layout | standards/sbml/level-3/version-1/layout/version-1/release-1 | 142 |
| SBML Level 3 Layout Package Version 1 | sbml.level-3.version-1.layout.version-1 | standards/sbml/level-3/version-1/layout/version-1/release-1 | 142 |
| SBML Level 3 Layout Package Version 1 Release 1 | sbml.level-3.version-1.layout.version-1.release-1 | standards/sbml/level-3/version-1/layout/version-1/release-1 | 142 |
| SBML Level 3 Multistate and Multicomponent Species Package | sbml.level-3.version-1.multi | standards/sbml/level-3/version-1/multi | 277 |
| SBML Level 3 Multistate and Multicomponent Species Package Version 1 | sbml.level-3.version-1.multi.version-1 | standards/sbml/level-3/version-1/multi/version-1 | 277 |
| SBML Level 3 Multistate and Multicomponent Species Package Version 1 Release 1 | sbml.level-3.version-1.multi.version-1.release-1 | standards/sbml/level-3/version-1/multi/version-1/release-1 | 219 |
| SBML Level 3 Multistate and Multicomponent Species Package Version 1 Release 2 | sbml.level-3.version-1.multi.version-1.release-2 | standards/sbml/level-3/version-1/multi/version-1/release-2 | 277 |
| SBML Level 3 Qualitative Models Package | sbml.level-3.version-1.qual | standards/sbml/level-3/version-1/qual/version-1/release-1 | 136 |
| SBML Level 3 Qualitative Models Package Version 1 | sbml.level-3.version-1.qual.version-1 | standards/sbml/level-3/version-1/qual/version-1/release-1 | 136 |
| SBML Level 3 Qualitative Models Package Version 1 Release 1 | sbml.level-3.version-1.qual.version-1.release-1 | standards/sbml/level-3/version-1/qual/version-1/release-1 | 136 |
| SBML Level 3 Render Package | sbml.level-3.version-1.render | standards/sbml/level-3/version-1/render/version-1/release-1 | 232 |
| SBML Level 3 Render Package Version 1 | sbml.level-3.version-1.render.version-1 | standards/sbml/level-3/version-1/render/version-1/release-1 | 232 |
| SBML Level 3 Render Package Version 1 Release 1 | sbml.level-3.version-1.qual.version-1.release-1 | standards/sbml/level-3/version-1/render/version-1/release-1 | 232 |
| Synthetic Biology Open Language | sbol | standards/sbol | 170 |
| SBOL version 1.1.0 | sbol.version-1.1.0 | standards/sbol/version-1.1.0 | 169 |
| SBOL version 2.0.0 | sbol.version-2.0.0 | standards/sbol/version-2.0.0 | 193 |
| SBOL version 2.0.1 | sbol.version-2.0.1 | standards/sbol/version-2.0.1 | 228 |
| SBOL version 2.1.0 | sbol.version-2.1.0 | standards/sbol/version-2.1.0 | 227 |
| SBOL version 2.2.0 | sbol.version-2.2.0 | standards/sbol/version-2.2.0 | 235 |
| SBOL Visual | sbol-visual | standards/sbol-visual | 233 |
| SBOL Visual version 1.0.0 | sbol-visual.version-1.0.0 | standards/sbol-visual/version-1.0.0 | 194 |
| SBOL Visual version 2.0 | sbol-visual.version-2.0 | standards/sbol-visual/version-2.0 | 233 |
| Simulation Experiment Description Markup Language | sed-ml | standards/sed-ml | 72 |
| SED-ML Level 1 | sed-ml.level-1 | standards/sed-ml/level-1/version-3 | 229 |
| SED-ML Level 1 Version 1 | sed-ml.level-1.version-1 | standards/sed-ml/level-1/version-1 | 73 |
| SED-ML Level 1 Version 2 | sed-ml.level-1.version-2 | standards/sed-ml/level-1/version-2 | 154 |
| SED-ML Level 1 Version 2 RC2 | sed-ml.level-1.version-2.RC2 | standards/sed-ml/level-1/version-2/RC2 | 153 |
| SED-ML Level 1 Version 2 RC | sed-ml.level-1.version-2.RC | standards/sed-ml/level-1/version-2/RC | 149 |
| SED-ML Level 1 Version 3 | sed-ml.level-1.version-3 | standards/sed-ml/level-1/version-3 | 229 |
| Nested Simulations / Tasks | sed-ml.proposal.nested-simulations | standards/sed-ml/proposal/nested-simulations/ | 106 |
| Frank Bergmann's Simple Nested Simulation proposal version 1 | sed-ml.proposal.nested-simulations.FB.version-1 | standards/sed-ml/proposal/nested-simulations/FB/version-1 | 90 |
| Frank Bergmann's Simple Nested Simulation proposal version 2 | sed-ml.proposal.nested-simulations.FB.version-2 | standards/sed-ml/proposal/nested-simulations/FB/version-2 | 91 |
| Frank Bergmann's Simple Nested Simulation proposal version 3 | sed-ml.proposal.nested-simulations.FB.version-3 | standards/sed-ml/proposal/nested-simulations/FB/version-3 | 104 |
| Richard Adams' Algorithm class proposal version 1 | sed-ml.proposal.kisao.RA.version-1 | standards/sed-ml/proposal/kisao/RA/version-1 | 110 |
| TErminology for the Description of DYnamics | teddy | standards/teddy | 127 |
| TEDDY rel-2014-04-24 | teddy.rel-2014-04-24 | standards/teddy/rel-2014-04-24 | 165 |